J7_8J1Z_001

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8J1Z|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8J1Z|1|a|C|8
8J1Z|1|a|G|9
8J1Z|1|a|A|10
8J1Z|1|a|C|11
8J1Z|1|a|U|12
8J1Z|1|a|A|13
8J1Z|1|a|A|14
8J1Z|1|a|G|15
*
8J1Z|1|a|U|525
8J1Z|1|a|A|526
8J1Z|1|a|C|527
8J1Z|1|a|A|528
8J1Z|1|a|A|529
8J1Z|1|a|G|530
8J1Z|1|a|C|531
*
8J1Z|1|a|G|2018
8J1Z|1|a|A|2019
8J1Z|1|a|A|2020
8J1Z|1|a|C|2021
8J1Z|1|a|U|2022
8J1Z|1|a|C|2023
*
8J1Z|1|a|G|2040
8J1Z|1|a|U|2041
8J1Z|1|a|A|2042
8J1Z|1|a|C|2043
*
8J1Z|1|a|G|2625
8J1Z|1|a|C|2626
8J1Z|1|a|G|2627
8J1Z|1|a|C|2628
8J1Z|1|a|U|2629
8J1Z|1|a|G|2630
*
8J1Z|1|a|C|2788
8J1Z|1|a|C|2789
*
8J1Z|1|a|G|2894
8J1Z|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32