J7_8JDJ_001

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8JDJ|1|D|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|1666
8JDJ|1|D|G|1667
8JDJ|1|D|A|1668
8JDJ|1|D|A|1669
8JDJ|1|D|G|1670
8JDJ|1|D|U|1671
*
8JDJ|1|D|A|1684
8JDJ|1|D|G|1685
*
8JDJ|1|D|U|1852
8JDJ|1|D|G|1853
8JDJ|1|D|G|1854
8JDJ|1|D|G|1855
*
8JDJ|1|D|C|1879
8JDJ|1|D|G|1880
8JDJ|1|D|C|1881
8JDJ|1|D|U|1882
8JDJ|1|D|G|1883
8JDJ|1|D|C|1884
*
8JDJ|1|D|G|1895
8JDJ|1|D|A|1896
8JDJ|1|D|A|1897
8JDJ|1|D|C|1898
8JDJ|1|D|G|1899
*
8JDJ|1|D|C|2077
8JDJ|1|D|C|2078
*
8JDJ|1|D|G|2278
8JDJ|1|D|A|2279
8JDJ|1|D|G|2280
8JDJ|1|D|U|2281
8JDJ|1|D|A|2282
8JDJ|1|D|G|2283

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain I

60S ribosomal protein L4

Chain L

60S ribosomal protein L7

Chain Q

60S ribosomal protein L13

Chain V

60S ribosomal protein L18

Chain Y

60S ribosomal protein L21

Chain f

60S ribosomal protein L27a

Chain g

60S ribosomal protein L29

Chain j

60S ribosomal protein L32

Chain k

60S ribosomal protein L35a