J7_8JDK_001

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8JDK|1|D|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|1666
8JDK|1|D|G|1667
8JDK|1|D|A|1668
8JDK|1|D|A|1669
8JDK|1|D|G|1670
8JDK|1|D|U|1671
*
8JDK|1|D|A|1684
8JDK|1|D|G|1685
*
8JDK|1|D|U|1852
8JDK|1|D|G|1853
8JDK|1|D|G|1854
8JDK|1|D|G|1855
*
8JDK|1|D|C|1879
8JDK|1|D|G|1880
8JDK|1|D|C|1881
8JDK|1|D|U|1882
8JDK|1|D|G|1883
8JDK|1|D|C|1884
*
8JDK|1|D|G|1895
8JDK|1|D|A|1896
8JDK|1|D|A|1897
8JDK|1|D|C|1898
8JDK|1|D|G|1899
*
8JDK|1|D|C|2077
8JDK|1|D|C|2078
*
8JDK|1|D|G|2278
8JDK|1|D|A|2279
8JDK|1|D|G|2280
8JDK|1|D|U|2281
8JDK|1|D|A|2282
8JDK|1|D|G|2283

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain I

60S ribosomal protein L4

Chain L

60S ribosomal protein L7

Chain Q

60S ribosomal protein L13

Chain V

60S ribosomal protein L18

Chain Y

60S ribosomal protein L21

Chain f

60S ribosomal protein L27a

Chain g

60S ribosomal protein L29

Chain j

60S ribosomal protein L32

Chain k

60S ribosomal protein L35a