J7_8JDM_001

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8JDM|1|D|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|1666
8JDM|1|D|G|1667
8JDM|1|D|A|1668
8JDM|1|D|A|1669
8JDM|1|D|G|1670
8JDM|1|D|U|1671
*
8JDM|1|D|A|1684
8JDM|1|D|G|1685
*
8JDM|1|D|U|1852
8JDM|1|D|G|1853
8JDM|1|D|G|1854
8JDM|1|D|G|1855
*
8JDM|1|D|C|1879
8JDM|1|D|G|1880
8JDM|1|D|C|1881
8JDM|1|D|U|1882
8JDM|1|D|G|1883
8JDM|1|D|C|1884
*
8JDM|1|D|G|1895
8JDM|1|D|A|1896
8JDM|1|D|A|1897
8JDM|1|D|C|1898
8JDM|1|D|G|1899
*
8JDM|1|D|C|2077
8JDM|1|D|C|2078
*
8JDM|1|D|G|2278
8JDM|1|D|A|2279
8JDM|1|D|G|2280
8JDM|1|D|U|2281
8JDM|1|D|A|2282
8JDM|1|D|G|2283

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain I

60S ribosomal protein L4

Chain L

60S ribosomal protein L7

Chain Q

60S ribosomal protein L13

Chain V

60S ribosomal protein L18

Chain Y

60S ribosomal protein L21

Chain f

60S ribosomal protein L27a

Chain g

60S ribosomal protein L29

Chain j

60S ribosomal protein L32

Chain k

60S ribosomal protein L35a