Loop J7_8OEQ

3D structure

PDB id: 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length: 31 nucleotides
Bulged bases: 8OEQ|1|1|G|1112
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OEQ|1|1|C|945
8OEQ|1|1|G|946
8OEQ|1|1|A|947
8OEQ|1|1|A|948
8OEQ|1|1|G|949
8OEQ|1|1|U|950
*
8OEQ|1|1|A|963
8OEQ|1|1|G|964
*
8OEQ|1|1|U|1110
8OEQ|1|1|G|1111
8OEQ|1|1|G|1112
8OEQ|1|1|G|1113
*
8OEQ|1|1|C|1137
8OEQ|1|1|G|1138
8OEQ|1|1|A|1139
8OEQ|1|1|U|1140
8OEQ|1|1|G|1141
8OEQ|1|1|C|1142
*
8OEQ|1|1|G|1153
8OEQ|1|1|A|1154
8OEQ|1|1|A|1155
8OEQ|1|1|C|1156
8OEQ|1|1|G|1157
*
8OEQ|1|1|C|1334
8OEQ|1|1|C|1335
*
8OEQ|1|1|G|1361
8OEQ|1|1|A|1362
8OEQ|1|1|G|1363
8OEQ|1|1|U|1364
8OEQ|1|1|A|1365
8OEQ|1|1|G|1366

Current chains

Chain 1: 25S ribosomal RNA

Nearby chains

Chain 2: 60S ribosomal protein L21-A
Chain 3: 5S ribosomal RNA; 5S rRNA
Chain AB: 60S ribosomal protein L28
Chain AC: 60S ribosomal protein L29
Chain AF: 60S ribosomal protein L32
Chain AG: 60S ribosomal protein L33-A
Chain l: 60S ribosomal protein L4-B
Chain o: 60S ribosomal protein L7-A
Chain t: 60S ribosomal protein L13
Chain y: 60S ribosomal protein L18-A

J7_8OEQ_001