J7_8OH6_002
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8OH6|1|AS|G|1112
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OH6|1|AS|C|945
8OH6|1|AS|G|946
8OH6|1|AS|A|947
8OH6|1|AS|A|948
8OH6|1|AS|G|949
8OH6|1|AS|U|950
*
8OH6|1|AS|A|963
8OH6|1|AS|G|964
*
8OH6|1|AS|U|1110
8OH6|1|AS|G|1111
8OH6|1|AS|G|1112
8OH6|1|AS|G|1113
*
8OH6|1|AS|C|1137
8OH6|1|AS|G|1138
8OH6|1|AS|A|1139
8OH6|1|AS|U|1140
8OH6|1|AS|G|1141
8OH6|1|AS|C|1142
*
8OH6|1|AS|G|1153
8OH6|1|AS|A|1154
8OH6|1|AS|A|1155
8OH6|1|AS|C|1156
8OH6|1|AS|G|1157
*
8OH6|1|AS|C|1334
8OH6|1|AS|C|1335
*
8OH6|1|AS|G|1361
8OH6|1|AS|A|1362
8OH6|1|AS|G|1363
8OH6|1|AS|U|1364
8OH6|1|AS|A|1365
8OH6|1|AS|G|1366
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain AY
- 60S ribosomal protein L4-B
- Chain BB
- 60S ribosomal protein L7-A
- Chain BG
- 60S ribosomal protein L13
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BV
- 60S ribosomal protein L28
- Chain BW
- 60S ribosomal protein L29
- Chain BZ
- 60S ribosomal protein L32
- Chain CA
- 60S ribosomal protein L33-A
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