3D structure

PDB id
8P16 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8P16|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P16|1|1|C|817
8P16|1|1|G|818
8P16|1|1|A|819
8P16|1|1|A|820
8P16|1|1|A|821
8P16|1|1|G|822
*
8P16|1|1|C|835
8P16|1|1|G|836
8P16|1|1|C|837
8P16|1|1|C|838
*
8P16|1|1|G|940
8P16|1|1|A|941
8P16|1|1|G|942
8P16|1|1|A|943
8P16|1|1|C|944
8P16|1|1|A|945
8P16|1|1|C|946
*
8P16|1|1|G|971
8P16|1|1|A|972
8P16|1|1|A|973
8P16|1|1|G|974
8P16|1|1|A|975
8P16|1|1|G|976
*
8P16|1|1|C|987
8P16|1|1|A|988
8P16|1|1|G|989
8P16|1|1|A|990
8P16|1|1|C|991
*
8P16|1|1|G|1163
8P16|1|1|C|1164
*
8P16|1|1|G|1185
8P16|1|1|G|1186
8P16|1|1|G|1187
8P16|1|1|U|1188
8P16|1|1|A|1189
8P16|1|1|G|1190

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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