3D structure

PDB id
8P18 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8P18|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P18|1|1|C|817
8P18|1|1|G|818
8P18|1|1|A|819
8P18|1|1|A|820
8P18|1|1|A|821
8P18|1|1|G|822
*
8P18|1|1|C|835
8P18|1|1|G|836
8P18|1|1|C|837
8P18|1|1|C|838
*
8P18|1|1|G|940
8P18|1|1|A|941
8P18|1|1|G|942
8P18|1|1|A|943
8P18|1|1|C|944
8P18|1|1|A|945
8P18|1|1|C|946
*
8P18|1|1|G|971
8P18|1|1|A|972
8P18|1|1|A|973
8P18|1|1|G|974
8P18|1|1|A|975
8P18|1|1|G|976
*
8P18|1|1|C|987
8P18|1|1|A|988
8P18|1|1|G|989
8P18|1|1|A|990
8P18|1|1|C|991
*
8P18|1|1|G|1163
8P18|1|1|C|1164
*
8P18|1|1|G|1185
8P18|1|1|G|1186
8P18|1|1|G|1187
8P18|1|1|U|1188
8P18|1|1|A|1189
8P18|1|1|G|1190

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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