J7_8P85_002

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8P85|1|AR|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|AR|C|949
8P85|1|AR|G|950
8P85|1|AR|A|951
8P85|1|AR|A|952
8P85|1|AR|G|953
8P85|1|AR|U|954
*
8P85|1|AR|A|967
8P85|1|AR|G|968
*
8P85|1|AR|U|1114
8P85|1|AR|G|1115
8P85|1|AR|G|1116
8P85|1|AR|G|1117
*
8P85|1|AR|C|1141
8P85|1|AR|G|1142
8P85|1|AR|A|1143
8P85|1|AR|U|1144
8P85|1|AR|G|1145
8P85|1|AR|C|1146
*
8P85|1|AR|G|1157
8P85|1|AR|A|1158
8P85|1|AR|A|1159
8P85|1|AR|C|1160
8P85|1|AR|G|1161
*
8P85|1|AR|C|1338
8P85|1|AR|C|1339
*
8P85|1|AR|G|1365
8P85|1|AR|A|1366
8P85|1|AR|G|1367
8P85|1|AR|U|1368
8P85|1|AR|A|1369
8P85|1|AR|G|1370

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CI

60S ribosomal protein L7-A

Chain CN

60S ribosomal protein L13-A

Chain CS

60S ribosomal protein L18-A

Chain CV

60S ribosomal protein L21-A

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DG

60S ribosomal protein L32

Chain DH

60S ribosomal protein L33-A