J7_8P8M_001
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8P8M|1|A|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|C|949
8P8M|1|A|G|950
8P8M|1|A|A|951
8P8M|1|A|A|952
8P8M|1|A|G|953
8P8M|1|A|U|954
*
8P8M|1|A|A|967
8P8M|1|A|G|968
*
8P8M|1|A|U|1114
8P8M|1|A|G|1115
8P8M|1|A|G|1116
8P8M|1|A|G|1117
*
8P8M|1|A|C|1141
8P8M|1|A|G|1142
8P8M|1|A|A|1143
8P8M|1|A|U|1144
8P8M|1|A|G|1145
8P8M|1|A|C|1146
*
8P8M|1|A|G|1157
8P8M|1|A|A|1158
8P8M|1|A|A|1159
8P8M|1|A|C|1160
8P8M|1|A|G|1161
*
8P8M|1|A|C|1338
8P8M|1|A|C|1339
*
8P8M|1|A|G|1365
8P8M|1|A|A|1366
8P8M|1|A|G|1367
8P8M|1|A|U|1368
8P8M|1|A|A|1369
8P8M|1|A|G|1370
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain LK
- 60S ribosomal protein L7-A
- Chain QP
- 60S ribosomal protein L18-A
- Chain QT
- 60S ribosomal protein L21-A
- Chain RA
- 60S ribosomal protein L28
- Chain RB
- 60S ribosomal protein L29
- Chain RE
- 60S ribosomal protein L32
- Chain RF
- 60S ribosomal protein L33-A
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