J7_8PNN_002

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8PNN|1|AR|G|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|AR|C|949
8PNN|1|AR|G|950
8PNN|1|AR|A|951
8PNN|1|AR|A|952
8PNN|1|AR|G|953
8PNN|1|AR|U|954
*
8PNN|1|AR|A|967
8PNN|1|AR|G|968
*
8PNN|1|AR|U|1114
8PNN|1|AR|G|1115
8PNN|1|AR|G|1116
8PNN|1|AR|G|1117
*
8PNN|1|AR|C|1141
8PNN|1|AR|G|1142
8PNN|1|AR|A|1143
8PNN|1|AR|U|1144
8PNN|1|AR|G|1145
8PNN|1|AR|C|1146
*
8PNN|1|AR|G|1157
8PNN|1|AR|A|1158
8PNN|1|AR|A|1159
8PNN|1|AR|C|1160
8PNN|1|AR|G|1161
*
8PNN|1|AR|C|1338
8PNN|1|AR|C|1339
*
8PNN|1|AR|G|1365
8PNN|1|AR|A|1366
8PNN|1|AR|G|1367
8PNN|1|AR|U|1368
8PNN|1|AR|A|1369
8PNN|1|AR|G|1370

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CI

60S ribosomal protein L7-A

Chain CN

60S ribosomal protein L13-A

Chain CS

60S ribosomal protein L18-A

Chain CV

60S ribosomal protein L21-A

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DG

60S ribosomal protein L32

Chain DH

60S ribosomal protein L33-A