J7_8PVK_001
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|C|931
8PVK|1|C1|G|932
8PVK|1|C1|A|933
8PVK|1|C1|A|934
8PVK|1|C1|G|935
8PVK|1|C1|U|936
8PVK|1|C1|U|937
8PVK|1|C1|U|938
*
8PVK|1|C1|A|947
8PVK|1|C1|U|948
8PVK|1|C1|A|949
8PVK|1|C1|G|950
*
8PVK|1|C1|U|1097
8PVK|1|C1|G|1098
8PVK|1|C1|G|1099
8PVK|1|C1|G|1100
*
8PVK|1|C1|C|1124
8PVK|1|C1|G|1125
8PVK|1|C1|A|1126
8PVK|1|C1|U|1127
8PVK|1|C1|G|1128
8PVK|1|C1|C|1129
*
8PVK|1|C1|G|1140
8PVK|1|C1|A|1141
8PVK|1|C1|A|1142
8PVK|1|C1|C|1143
8PVK|1|C1|G|1144
*
8PVK|1|C1|C|1321
8PVK|1|C1|C|1322
*
8PVK|1|C1|G|1348
8PVK|1|C1|A|1349
8PVK|1|C1|G|1350
8PVK|1|C1|U|1351
8PVK|1|C1|A|1352
8PVK|1|C1|G|1353
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cg
- Ribosome biogenesis regulatory protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LQ
- Ribosomal protein L18-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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