J7_8Q4F_001

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8Q4F|1|a|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|C|817
8Q4F|1|a|G|818
8Q4F|1|a|A|819
8Q4F|1|a|A|820
8Q4F|1|a|A|821
8Q4F|1|a|G|822
*
8Q4F|1|a|C|835
8Q4F|1|a|G|836
8Q4F|1|a|C|837
8Q4F|1|a|C|838
*
8Q4F|1|a|G|940
8Q4F|1|a|A|941
8Q4F|1|a|G|942
8Q4F|1|a|A|943
8Q4F|1|a|C|944
8Q4F|1|a|A|945
8Q4F|1|a|C|946
*
8Q4F|1|a|G|971
8Q4F|1|a|A|972
8Q4F|1|a|A|973
8Q4F|1|a|G|974
8Q4F|1|a|A|975
8Q4F|1|a|G|976
*
8Q4F|1|a|C|987
8Q4F|1|a|A|988
8Q4F|1|a|G|989
8Q4F|1|a|A|990
8Q4F|1|a|C|991
*
8Q4F|1|a|G|1163
8Q4F|1|a|C|1164
*
8Q4F|1|a|G|1185
8Q4F|1|a|G|1186
8Q4F|1|a|G|1187
8Q4F|1|a|U|1188
8Q4F|1|a|A|1189
8Q4F|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain b

5S ribosomal RNA; 5S rRNA

Chain k

Large ribosomal subunit protein uL15

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain y

Large ribosomal subunit protein uL30