J7_8QFD_001
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8QFD|1|5|G|1846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QFD|1|5|C|1658
8QFD|1|5|G|1659
8QFD|1|5|A|1660
8QFD|1|5|A|1661
8QFD|1|5|G|1662
8QFD|1|5|U|1663
*
8QFD|1|5|A|1676
8QFD|1|5|G|1677
*
8QFD|1|5|U|1844
8QFD|1|5|G|1845
8QFD|1|5|G|1846
8QFD|1|5|G|1847
*
8QFD|1|5|C|1871
8QFD|1|5|G|1872
8QFD|1|5|C|1873
8QFD|1|5|U|1874
8QFD|1|5|G|1875
8QFD|1|5|C|1876
*
8QFD|1|5|G|1887
8QFD|1|5|A|1888
8QFD|1|5|A|1889
8QFD|1|5|C|1890
8QFD|1|5|G|1891
*
8QFD|1|5|C|2069
8QFD|1|5|C|2070
*
8QFD|1|5|G|2270
8QFD|1|5|A|2271
8QFD|1|5|G|2272
8QFD|1|5|U|2273
8QFD|1|5|A|2274
8QFD|1|5|G|2275
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain F
- Large ribosomal subunit protein uL30
- Chain L
- 60S ribosomal protein L13
- Chain Q
- 60S ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
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