J7_8QOI_001
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8QOI|1|L5|G|1854
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QOI|1|L5|C|1666
8QOI|1|L5|G|1667
8QOI|1|L5|A|1668
8QOI|1|L5|A|1669
8QOI|1|L5|G|1670
8QOI|1|L5|U|1671
*
8QOI|1|L5|A|1684
8QOI|1|L5|G|1685
*
8QOI|1|L5|U|1852
8QOI|1|L5|G|1853
8QOI|1|L5|G|1854
8QOI|1|L5|G|1855
*
8QOI|1|L5|C|1879
8QOI|1|L5|G|1880
8QOI|1|L5|OMC|1881
8QOI|1|L5|U|1882
8QOI|1|L5|G|1883
8QOI|1|L5|C|1884
*
8QOI|1|L5|G|1895
8QOI|1|L5|A|1896
8QOI|1|L5|A|1897
8QOI|1|L5|C|1898
8QOI|1|L5|G|1899
*
8QOI|1|L5|C|2077
8QOI|1|L5|C|2078
*
8QOI|1|L5|G|2278
8QOI|1|L5|A|2279
8QOI|1|L5|G|2280
8QOI|1|L5|U|2281
8QOI|1|L5|A|2282
8QOI|1|L5|G|2283
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LL
- 60S ribosomal protein L13
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- 60S ribosomal protein L29
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
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