J7_8RD8_001

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAAUGAAG*UACAAGC*GAAAUC*GUAC*GCGUUG*CC*GG

Length

35 nucleotides

Bulged bases

8RD8|1|Z2|A|2007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RD8|1|Z2|U|15
8RD8|1|Z2|A|16
8RD8|1|Z2|A|17
8RD8|1|Z2|U|18
8RD8|1|Z2|G|19
8RD8|1|Z2|A|20
8RD8|1|Z2|A|21
8RD8|1|Z2|G|22
*
8RD8|1|Z2|U|508
8RD8|1|Z2|A|509
8RD8|1|Z2|C|510
8RD8|1|Z2|A|511
8RD8|1|Z2|A|512
8RD8|1|Z2|G|513
8RD8|1|Z2|C|514
*
8RD8|1|Z2|G|2004
8RD8|1|Z2|A|2005
8RD8|1|Z2|A|2006
8RD8|1|Z2|A|2007
8RD8|1|Z2|U|2008
8RD8|1|Z2|C|2009
*
8RD8|1|Z2|G|2026
8RD8|1|Z2|U|2027
8RD8|1|Z2|A|2028
8RD8|1|Z2|C|2029
*
8RD8|1|Z2|G|2608
8RD8|1|Z2|C|2609
8RD8|1|Z2|G|2610
8RD8|1|Z2|U|2611
8RD8|1|Z2|U|2612
8RD8|1|Z2|G|2613
*
8RD8|1|Z2|C|2771
8RD8|1|Z2|C|2772
*
8RD8|1|Z2|G|2860
8RD8|1|Z2|G|2861

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain IX

Large ribosomal subunit protein uL13

Chain PO

Large ribosomal subunit protein bL20

Chain RF

Large ribosomal subunit protein uL22

Chain aA

Large ribosomal subunit protein bL32