J7_8RD8_002

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GGAGAG*CAGAC*GA*UGGUAG

Length

36 nucleotides

Bulged bases

8RD8|1|Z2|A|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RD8|1|Z2|C|802
8RD8|1|Z2|G|803
8RD8|1|Z2|A|804
8RD8|1|Z2|A|805
8RD8|1|Z2|A|806
8RD8|1|Z2|G|807
*
8RD8|1|Z2|C|820
8RD8|1|Z2|G|821
8RD8|1|Z2|C|822
8RD8|1|Z2|C|823
*
8RD8|1|Z2|G|924
8RD8|1|Z2|A|925
8RD8|1|Z2|G|926
8RD8|1|Z2|A|927
8RD8|1|Z2|C|928
8RD8|1|Z2|A|929
8RD8|1|Z2|C|930
*
8RD8|1|Z2|G|955
8RD8|1|Z2|G|956
8RD8|1|Z2|A|957
8RD8|1|Z2|G|958
8RD8|1|Z2|A|959
8RD8|1|Z2|G|960
*
8RD8|1|Z2|C|971
8RD8|1|Z2|A|972
8RD8|1|Z2|G|973
8RD8|1|Z2|A|974
8RD8|1|Z2|C|975
*
8RD8|1|Z2|G|1148
8RD8|1|Z2|A|1149
*
8RD8|1|Z2|U|1169
8RD8|1|Z2|G|1170
8RD8|1|Z2|G|1171
8RD8|1|Z2|U|1172
8RD8|1|Z2|A|1173
8RD8|1|Z2|G|1174

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain Kd

Large ribosomal subunit protein uL15

Chain PO

Large ribosomal subunit protein bL20

Chain Qb

Large ribosomal subunit protein bL21

Chain YW

Large ribosomal subunit protein uL30

Chain dh

Large ribosomal subunit protein bL35