J7_8RJB_001

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8RJB|1|K|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|1666
8RJB|1|K|A|1667
8RJB|1|K|A|1668
8RJB|1|K|A|1669
8RJB|1|K|G|1670
8RJB|1|K|U|1671
*
8RJB|1|K|A|1684
8RJB|1|K|G|1685
*
8RJB|1|K|U|1852
8RJB|1|K|G|1853
8RJB|1|K|G|1854
8RJB|1|K|G|1855
*
8RJB|1|K|C|1879
8RJB|1|K|G|1880
8RJB|1|K|C|1881
8RJB|1|K|U|1882
8RJB|1|K|G|1883
8RJB|1|K|C|1884
*
8RJB|1|K|G|1895
8RJB|1|K|A|1896
8RJB|1|K|A|1897
8RJB|1|K|C|1898
8RJB|1|K|G|1899
*
8RJB|1|K|C|2077
8RJB|1|K|C|2078
*
8RJB|1|K|G|2278
8RJB|1|K|A|2279
8RJB|1|K|G|2280
8RJB|1|K|U|2281
8RJB|1|K|A|2282
8RJB|1|K|G|2283

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain F

Ribosomal Protein uL30

Chain L

60S ribosomal protein L13

Chain Q

Ribosomal protein L26

Chain T

60S ribosomal protein L21

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain e

Ribosomal protein L32

Chain f

60S ribosomal protein L35a

Chain u

5S ribosomal RNA; 5S rRNA