J7_8RJD_001
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8RJD|1|K|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|C|1666
8RJD|1|K|A|1667
8RJD|1|K|A|1668
8RJD|1|K|A|1669
8RJD|1|K|G|1670
8RJD|1|K|U|1671
*
8RJD|1|K|A|1684
8RJD|1|K|G|1685
*
8RJD|1|K|U|1852
8RJD|1|K|G|1853
8RJD|1|K|G|1854
8RJD|1|K|G|1855
*
8RJD|1|K|C|1879
8RJD|1|K|G|1880
8RJD|1|K|C|1881
8RJD|1|K|U|1882
8RJD|1|K|G|1883
8RJD|1|K|C|1884
*
8RJD|1|K|G|1895
8RJD|1|K|A|1896
8RJD|1|K|A|1897
8RJD|1|K|C|1898
8RJD|1|K|G|1899
*
8RJD|1|K|C|2077
8RJD|1|K|C|2078
*
8RJD|1|K|G|2278
8RJD|1|K|A|2279
8RJD|1|K|G|2280
8RJD|1|K|U|2281
8RJD|1|K|A|2282
8RJD|1|K|G|2283
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain F
- Ribosomal Protein uL30
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain e
- Ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
- Chain u
- 5S ribosomal RNA; 5S rRNA
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