J7_8RPY_001
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 8RPY|1|A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RPY|1|A|C|8
8RPY|1|A|G|9
8RPY|1|A|A|10
8RPY|1|A|C|11
8RPY|1|A|U|12
8RPY|1|A|A|13
8RPY|1|A|A|14
8RPY|1|A|G|15
*
8RPY|1|A|U|525
8RPY|1|A|A|526
8RPY|1|A|C|527
8RPY|1|A|A|528
8RPY|1|A|A|529
8RPY|1|A|G|530
8RPY|1|A|C|531
*
8RPY|1|A|G|2018
8RPY|1|A|A|2019
8RPY|1|A|A|2020
8RPY|1|A|C|2021
8RPY|1|A|U|2022
8RPY|1|A|C|2023
*
8RPY|1|A|G|2040
8RPY|1|A|U|2041
8RPY|1|A|A|2042
8RPY|1|A|C|2043
*
8RPY|1|A|G|2625
8RPY|1|A|C|2626
8RPY|1|A|G|2627
8RPY|1|A|C|2628
8RPY|1|A|U|2629
8RPY|1|A|G|2630
*
8RPY|1|A|C|2788
8RPY|1|A|C|2789
*
8RPY|1|A|G|2894
8RPY|1|A|G|2895
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- Large ribosomal subunit protein uL13
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
Coloring options: