J7_8RQ0_001

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8RQ0|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ0|1|A|C|8
8RQ0|1|A|G|9
8RQ0|1|A|A|10
8RQ0|1|A|C|11
8RQ0|1|A|U|12
8RQ0|1|A|A|13
8RQ0|1|A|A|14
8RQ0|1|A|G|15
*
8RQ0|1|A|U|525
8RQ0|1|A|A|526
8RQ0|1|A|C|527
8RQ0|1|A|A|528
8RQ0|1|A|A|529
8RQ0|1|A|G|530
8RQ0|1|A|C|531
*
8RQ0|1|A|G|2018
8RQ0|1|A|A|2019
8RQ0|1|A|A|2020
8RQ0|1|A|C|2021
8RQ0|1|A|U|2022
8RQ0|1|A|C|2023
*
8RQ0|1|A|G|2040
8RQ0|1|A|U|2041
8RQ0|1|A|A|2042
8RQ0|1|A|C|2043
*
8RQ0|1|A|G|2625
8RQ0|1|A|C|2626
8RQ0|1|A|G|2627
8RQ0|1|A|C|2628
8RQ0|1|A|U|2629
8RQ0|1|A|G|2630
*
8RQ0|1|A|C|2788
8RQ0|1|A|C|2789
*
8RQ0|1|A|G|2894
8RQ0|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL22