J7_8RQ2_002
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 8RQ2|1|A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RQ2|1|A|C|817
8RQ2|1|A|G|818
8RQ2|1|A|A|819
8RQ2|1|A|A|820
8RQ2|1|A|A|821
8RQ2|1|A|G|822
*
8RQ2|1|A|C|835
8RQ2|1|A|G|836
8RQ2|1|A|C|837
*
8RQ2|1|A|G|942
8RQ2|1|A|A|943
8RQ2|1|A|C|944
8RQ2|1|A|A|945
8RQ2|1|A|C|946
*
8RQ2|1|A|G|971
8RQ2|1|A|A|972
8RQ2|1|A|A|973
8RQ2|1|A|G|974
8RQ2|1|A|A|975
8RQ2|1|A|G|976
*
8RQ2|1|A|C|987
8RQ2|1|A|A|988
8RQ2|1|A|G|989
8RQ2|1|A|A|990
8RQ2|1|A|C|991
*
8RQ2|1|A|G|1163
8RQ2|1|A|C|1164
*
8RQ2|1|A|G|1185
8RQ2|1|A|G|1186
8RQ2|1|A|G|1187
8RQ2|1|A|U|1188
8RQ2|1|A|A|1189
8RQ2|1|A|G|1190
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- Large ribosomal subunit protein uL15
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
- Chain Z
- Large ribosomal subunit protein uL30
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