J7_8SYL_001
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 8SYL|1|A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8SYL|1|A|C|8
8SYL|1|A|G|9
8SYL|1|A|A|10
8SYL|1|A|C|11
8SYL|1|A|U|12
8SYL|1|A|A|13
8SYL|1|A|A|14
8SYL|1|A|G|15
*
8SYL|1|A|U|525
8SYL|1|A|A|526
8SYL|1|A|C|527
8SYL|1|A|A|528
8SYL|1|A|A|529
8SYL|1|A|G|530
8SYL|1|A|C|531
*
8SYL|1|A|G|2018
8SYL|1|A|A|2019
8SYL|1|A|A|2020
8SYL|1|A|C|2021
8SYL|1|A|U|2022
8SYL|1|A|C|2023
*
8SYL|1|A|G|2040
8SYL|1|A|U|2041
8SYL|1|A|A|2042
8SYL|1|A|C|2043
*
8SYL|1|A|G|2625
8SYL|1|A|C|2626
8SYL|1|A|G|2627
8SYL|1|A|C|2628
8SYL|1|A|U|2629
8SYL|1|A|G|2630
*
8SYL|1|A|C|2788
8SYL|1|A|C|2789
*
8SYL|1|A|G|2894
8SYL|1|A|G|2895
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L13
- Chain S
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L22
Coloring options: