J7_8T3E_001
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGAAGUUU*A(PSU)AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 8T3E|1|A1|G|1116
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3E|1|A1|C|949
8T3E|1|A1|G|950
8T3E|1|A1|A|951
8T3E|1|A1|A|952
8T3E|1|A1|G|953
8T3E|1|A1|U|954
8T3E|1|A1|U|955
8T3E|1|A1|U|956
*
8T3E|1|A1|A|965
8T3E|1|A1|PSU|966
8T3E|1|A1|A|967
8T3E|1|A1|G|968
*
8T3E|1|A1|U|1114
8T3E|1|A1|G|1115
8T3E|1|A1|G|1116
8T3E|1|A1|G|1117
*
8T3E|1|A1|C|1141
8T3E|1|A1|G|1142
8T3E|1|A1|A|1143
8T3E|1|A1|U|1144
8T3E|1|A1|G|1145
8T3E|1|A1|C|1146
*
8T3E|1|A1|G|1157
8T3E|1|A1|A|1158
8T3E|1|A1|A|1159
8T3E|1|A1|C|1160
8T3E|1|A1|G|1161
*
8T3E|1|A1|C|1338
8T3E|1|A1|C|1339
*
8T3E|1|A1|G|1365
8T3E|1|A1|A|1366
8T3E|1|A1|G|1367
8T3E|1|A1|U|1368
8T3E|1|A1|A|1369
8T3E|1|A1|G|1370
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AF
- 60S ribosomal protein L7-A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ae
- RPL32 isoform 1
- Chain Af
- 60S ribosomal protein L33-A
Coloring options: