3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGAAGUUU*A(PSU)AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
35 nucleotides
Bulged bases
8T3E|1|A1|G|1116
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3E|1|A1|C|949
8T3E|1|A1|G|950
8T3E|1|A1|A|951
8T3E|1|A1|A|952
8T3E|1|A1|G|953
8T3E|1|A1|U|954
8T3E|1|A1|U|955
8T3E|1|A1|U|956
*
8T3E|1|A1|A|965
8T3E|1|A1|PSU|966
8T3E|1|A1|A|967
8T3E|1|A1|G|968
*
8T3E|1|A1|U|1114
8T3E|1|A1|G|1115
8T3E|1|A1|G|1116
8T3E|1|A1|G|1117
*
8T3E|1|A1|C|1141
8T3E|1|A1|G|1142
8T3E|1|A1|A|1143
8T3E|1|A1|U|1144
8T3E|1|A1|G|1145
8T3E|1|A1|C|1146
*
8T3E|1|A1|G|1157
8T3E|1|A1|A|1158
8T3E|1|A1|A|1159
8T3E|1|A1|C|1160
8T3E|1|A1|G|1161
*
8T3E|1|A1|C|1338
8T3E|1|A1|C|1339
*
8T3E|1|A1|G|1365
8T3E|1|A1|A|1366
8T3E|1|A1|G|1367
8T3E|1|A1|U|1368
8T3E|1|A1|A|1369
8T3E|1|A1|G|1370

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A3
5S ribosomal RNA; 5S rRNA
Chain AC
RPL4A isoform 1
Chain AF
60S ribosomal protein L7-A
Chain AL
60S ribosomal protein L13-A
Chain AQ
60S ribosomal protein L18-A
Chain AT
60S ribosomal protein L21-A
Chain Aa
60S ribosomal protein L28
Chain Ab
RPL29 isoform 1
Chain Ae
RPL32 isoform 1
Chain Af
60S ribosomal protein L33-A

Coloring options:

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