J7_8T5D_002
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 8T5D|1|B|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T5D|1|B|C|817
8T5D|1|B|G|818
8T5D|1|B|A|819
8T5D|1|B|A|820
8T5D|1|B|A|821
8T5D|1|B|G|822
*
8T5D|1|B|C|835
8T5D|1|B|G|836
8T5D|1|B|C|837
8T5D|1|B|C|838
*
8T5D|1|B|G|940
8T5D|1|B|A|941
8T5D|1|B|G|942
8T5D|1|B|A|943
8T5D|1|B|C|944
8T5D|1|B|A|945
8T5D|1|B|C|946
*
8T5D|1|B|G|971
8T5D|1|B|A|972
8T5D|1|B|A|973
8T5D|1|B|G|974
8T5D|1|B|A|975
8T5D|1|B|G|976
*
8T5D|1|B|C|987
8T5D|1|B|A|988
8T5D|1|B|G|989
8T5D|1|B|A|990
8T5D|1|B|C|991
*
8T5D|1|B|G|1163
8T5D|1|B|C|1164
*
8T5D|1|B|G|1185
8T5D|1|B|G|1186
8T5D|1|B|G|1187
8T5D|1|B|U|1188
8T5D|1|B|A|1189
8T5D|1|B|G|1190
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- Ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
Coloring options: