J7_8T8B_001

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

8T8B|1|1A|G|530, 8T8B|1|1A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8B|1|1A|A|8
8T8B|1|1A|U|9
8T8B|1|1A|G|10
8T8B|1|1A|G|11
8T8B|1|1A|U|12
8T8B|1|1A|A|13
8T8B|1|1A|A|14
8T8B|1|1A|G|15
*
8T8B|1|1A|U|525
8T8B|1|1A|A|526
8T8B|1|1A|C|527
8T8B|1|1A|A|528
8T8B|1|1A|A|529
8T8B|1|1A|G|530
8T8B|1|1A|C|531
*
8T8B|1|1A|G|2018
8T8B|1|1A|A|2019
8T8B|1|1A|A|2020
8T8B|1|1A|C|2021
8T8B|1|1A|U|2022
8T8B|1|1A|G|2023
*
8T8B|1|1A|C|2040
8T8B|1|1A|U|2041
8T8B|1|1A|A|2042
8T8B|1|1A|C|2043
*
8T8B|1|1A|G|2625
8T8B|1|1A|C|2626
8T8B|1|1A|G|2627
8T8B|1|1A|C|2628
8T8B|1|1A|A|2629
8T8B|1|1A|G|2630
*
8T8B|1|1A|C|2788
8T8B|1|1A|C|2789
*
8T8B|1|1A|G|2894
8T8B|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22