J7_8T8C_001

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8T8C|1|1A|A|945, 8T8C|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|1A|C|817
8T8C|1|1A|G|818
8T8C|1|1A|A|819
8T8C|1|1A|A|820
8T8C|1|1A|A|821
8T8C|1|1A|U|822
*
8T8C|1|1A|A|835
8T8C|1|1A|G|836
*
8T8C|1|1A|U|943
8T8C|1|1A|G|944
8T8C|1|1A|A|945
8T8C|1|1A|G|946
*
8T8C|1|1A|C|971
8T8C|1|1A|G|972
8T8C|1|1A|A|973
8T8C|1|1A|G|974
8T8C|1|1A|C|975
8T8C|1|1A|G|975|||A
8T8C|1|1A|C|976
*
8T8C|1|1A|G|987
8T8C|1|1A|A|988
8T8C|1|1A|G|989
8T8C|1|1A|A|990
8T8C|1|1A|C|991
*
8T8C|1|1A|G|1163
8T8C|1|1A|G|1164
*
8T8C|1|1A|C|1185
8T8C|1|1A|G|1186
8T8C|1|1A|G|1187
8T8C|1|1A|U|1188
8T8C|1|1A|A|1189
8T8C|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21