J7_8UD6_002

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8UD6|1|1A|A|945, 8UD6|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD6|1|1A|C|817
8UD6|1|1A|G|818
8UD6|1|1A|A|819
8UD6|1|1A|A|820
8UD6|1|1A|A|821
8UD6|1|1A|U|822
*
8UD6|1|1A|A|835
8UD6|1|1A|G|836
*
8UD6|1|1A|U|943
8UD6|1|1A|G|944
8UD6|1|1A|A|945
8UD6|1|1A|G|946
*
8UD6|1|1A|C|971
8UD6|1|1A|G|972
8UD6|1|1A|A|973
8UD6|1|1A|G|974
8UD6|1|1A|C|975
8UD6|1|1A|G|975|||A
8UD6|1|1A|C|976
*
8UD6|1|1A|G|987
8UD6|1|1A|A|988
8UD6|1|1A|G|989
8UD6|1|1A|A|990
8UD6|1|1A|C|991
*
8UD6|1|1A|G|1163
8UD6|1|1A|G|1164
*
8UD6|1|1A|C|1185
8UD6|1|1A|G|1186
8UD6|1|1A|G|1187
8UD6|1|1A|U|1188
8UD6|1|1A|A|1189
8UD6|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21