3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
Length
32 nucleotides
Bulged bases
8UD7|1|1A|A|945, 8UD7|1|1A|C|975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UD7|1|1A|C|817
8UD7|1|1A|G|818
8UD7|1|1A|A|819
8UD7|1|1A|A|820
8UD7|1|1A|A|821
8UD7|1|1A|U|822
*
8UD7|1|1A|A|835
8UD7|1|1A|G|836
*
8UD7|1|1A|U|943
8UD7|1|1A|G|944
8UD7|1|1A|A|945
8UD7|1|1A|G|946
*
8UD7|1|1A|C|971
8UD7|1|1A|G|972
8UD7|1|1A|A|973
8UD7|1|1A|G|974
8UD7|1|1A|C|975
8UD7|1|1A|G|975|||A
8UD7|1|1A|C|976
*
8UD7|1|1A|G|987
8UD7|1|1A|A|988
8UD7|1|1A|G|989
8UD7|1|1A|A|990
8UD7|1|1A|C|991
*
8UD7|1|1A|G|1163
8UD7|1|1A|G|1164
*
8UD7|1|1A|C|1185
8UD7|1|1A|G|1186
8UD7|1|1A|G|1187
8UD7|1|1A|U|1188
8UD7|1|1A|A|1189
8UD7|1|1A|G|1190

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 13
50S ribosomal protein L30
Chain 18
50S ribosomal protein L35
Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1P
50S ribosomal protein L15
Chain 1U
50S ribosomal protein L20
Chain 1V
50S ribosomal protein L21

Coloring options:

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