J7_8UD8_002
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 8UD8|1|1A|A|945, 8UD8|1|1A|C|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UD8|1|1A|C|817
8UD8|1|1A|G|818
8UD8|1|1A|A|819
8UD8|1|1A|A|820
8UD8|1|1A|A|821
8UD8|1|1A|U|822
*
8UD8|1|1A|A|835
8UD8|1|1A|G|836
*
8UD8|1|1A|U|943
8UD8|1|1A|G|944
8UD8|1|1A|A|945
8UD8|1|1A|G|946
*
8UD8|1|1A|C|971
8UD8|1|1A|G|972
8UD8|1|1A|A|973
8UD8|1|1A|G|974
8UD8|1|1A|C|975
8UD8|1|1A|G|975|||A
8UD8|1|1A|C|976
*
8UD8|1|1A|G|987
8UD8|1|1A|A|988
8UD8|1|1A|G|989
8UD8|1|1A|A|990
8UD8|1|1A|C|991
*
8UD8|1|1A|G|1163
8UD8|1|1A|G|1164
*
8UD8|1|1A|C|1185
8UD8|1|1A|G|1186
8UD8|1|1A|G|1187
8UD8|1|1A|U|1188
8UD8|1|1A|A|1189
8UD8|1|1A|G|1190
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
- Chain 18
- 50S ribosomal protein L35
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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