J7_8UIK_001
3D structure
- PDB id
- 8UIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8UIK|1|L5|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIK|1|L5|C|1666
8UIK|1|L5|G|1667
8UIK|1|L5|A|1668
8UIK|1|L5|A|1669
8UIK|1|L5|G|1670
8UIK|1|L5|U|1671
*
8UIK|1|L5|A|1684
8UIK|1|L5|G|1685
*
8UIK|1|L5|U|1852
8UIK|1|L5|G|1853
8UIK|1|L5|G|1854
8UIK|1|L5|G|1855
*
8UIK|1|L5|C|1879
8UIK|1|L5|G|1880
8UIK|1|L5|C|1881
8UIK|1|L5|U|1882
8UIK|1|L5|G|1883
8UIK|1|L5|C|1884
*
8UIK|1|L5|G|1895
8UIK|1|L5|A|1896
8UIK|1|L5|A|1897
8UIK|1|L5|C|1898
8UIK|1|L5|G|1899
*
8UIK|1|L5|C|2077
8UIK|1|L5|C|2078
*
8UIK|1|L5|G|2278
8UIK|1|L5|A|2279
8UIK|1|L5|G|2280
8UIK|1|L5|U|2281
8UIK|1|L5|A|2282
8UIK|1|L5|G|2283
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- 60S ribosomal protein L7
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
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