J7_8UJC_001

3D structure

PDB id

8UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

8UJC|1|L5|G|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJC|1|L5|C|1666
8UJC|1|L5|G|1667
8UJC|1|L5|A|1668
8UJC|1|L5|A|1669
8UJC|1|L5|G|1670
8UJC|1|L5|U|1671
*
8UJC|1|L5|A|1684
8UJC|1|L5|G|1685
*
8UJC|1|L5|U|1852
8UJC|1|L5|G|1853
8UJC|1|L5|G|1854
8UJC|1|L5|G|1855
*
8UJC|1|L5|C|1879
8UJC|1|L5|G|1880
8UJC|1|L5|C|1881
8UJC|1|L5|U|1882
8UJC|1|L5|G|1883
8UJC|1|L5|C|1884
*
8UJC|1|L5|G|1895
8UJC|1|L5|A|1896
8UJC|1|L5|A|1897
8UJC|1|L5|C|1898
8UJC|1|L5|G|1899
*
8UJC|1|L5|C|2077
8UJC|1|L5|C|2078
*
8UJC|1|L5|G|2278
8UJC|1|L5|A|2279
8UJC|1|L5|G|2280
8UJC|1|L5|U|2281
8UJC|1|L5|A|2282
8UJC|1|L5|G|2283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LL

Large ribosomal subunit protein eL13

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a