J7_8UQL_002

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8UQL|1|a|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQL|1|a|C|817
8UQL|1|a|G|818
8UQL|1|a|A|819
8UQL|1|a|A|820
8UQL|1|a|A|821
8UQL|1|a|G|822
*
8UQL|1|a|C|835
8UQL|1|a|G|836
8UQL|1|a|C|837
8UQL|1|a|C|838
*
8UQL|1|a|G|940
8UQL|1|a|A|941
8UQL|1|a|G|942
8UQL|1|a|A|943
8UQL|1|a|C|944
8UQL|1|a|A|945
8UQL|1|a|C|946
*
8UQL|1|a|G|971
8UQL|1|a|A|972
8UQL|1|a|A|973
8UQL|1|a|G|974
8UQL|1|a|A|975
8UQL|1|a|G|976
*
8UQL|1|a|C|987
8UQL|1|a|A|988
8UQL|1|a|G|989
8UQL|1|a|A|990
8UQL|1|a|C|991
*
8UQL|1|a|G|1163
8UQL|1|a|C|1164
*
8UQL|1|a|G|1185
8UQL|1|a|G|1186
8UQL|1|a|G|1187
8UQL|1|a|U|1188
8UQL|1|a|A|1189
8UQL|1|a|G|1190

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain d

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L30

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20