J7_8UVS_002

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8UVS|1|1A|A|945, 8UVS|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UVS|1|1A|C|817
8UVS|1|1A|G|818
8UVS|1|1A|A|819
8UVS|1|1A|A|820
8UVS|1|1A|A|821
8UVS|1|1A|U|822
*
8UVS|1|1A|A|835
8UVS|1|1A|G|836
*
8UVS|1|1A|U|943
8UVS|1|1A|G|944
8UVS|1|1A|A|945
8UVS|1|1A|G|946
*
8UVS|1|1A|C|971
8UVS|1|1A|G|972
8UVS|1|1A|A|973
8UVS|1|1A|G|974
8UVS|1|1A|C|975
8UVS|1|1A|G|975|||A
8UVS|1|1A|C|976
*
8UVS|1|1A|G|987
8UVS|1|1A|A|988
8UVS|1|1A|G|989
8UVS|1|1A|A|990
8UVS|1|1A|C|991
*
8UVS|1|1A|G|1163
8UVS|1|1A|G|1164
*
8UVS|1|1A|C|1185
8UVS|1|1A|G|1186
8UVS|1|1A|G|1187
8UVS|1|1A|U|1188
8UVS|1|1A|A|1189
8UVS|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21