J7_8V87_001
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 8V87|1|1|A|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|C|949
8V87|1|1|G|950
8V87|1|1|A|951
8V87|1|1|A|952
8V87|1|1|G|953
8V87|1|1|U|954
8V87|1|1|U|955
8V87|1|1|U|956
*
8V87|1|1|A|965
8V87|1|1|U|966
8V87|1|1|A|967
8V87|1|1|G|968
*
8V87|1|1|U|1114
8V87|1|1|G|1115
8V87|1|1|G|1116
8V87|1|1|G|1117
*
8V87|1|1|C|1141
8V87|1|1|G|1142
8V87|1|1|A|1143
8V87|1|1|U|1144
8V87|1|1|G|1145
8V87|1|1|C|1146
*
8V87|1|1|G|1157
8V87|1|1|A|1158
8V87|1|1|A|1159
8V87|1|1|C|1160
8V87|1|1|G|1161
*
8V87|1|1|C|1338
8V87|1|1|C|1339
*
8V87|1|1|G|1365
8V87|1|1|A|1366
8V87|1|1|G|1367
8V87|1|1|U|1368
8V87|1|1|A|1369
8V87|1|1|G|1370
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain J
- rRNA-processing protein EBP2
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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