J7_8VL1_001

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8VL1|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|C|8
8VL1|1|a|G|9
8VL1|1|a|A|10
8VL1|1|a|C|11
8VL1|1|a|U|12
8VL1|1|a|A|13
8VL1|1|a|A|14
8VL1|1|a|G|15
*
8VL1|1|a|U|525
8VL1|1|a|A|526
8VL1|1|a|C|527
8VL1|1|a|A|528
8VL1|1|a|A|529
8VL1|1|a|G|530
8VL1|1|a|C|531
*
8VL1|1|a|G|2018
8VL1|1|a|A|2019
8VL1|1|a|A|2020
8VL1|1|a|C|2021
8VL1|1|a|U|2022
8VL1|1|a|C|2023
*
8VL1|1|a|G|2040
8VL1|1|a|U|2041
8VL1|1|a|A|2042
8VL1|1|a|C|2043
*
8VL1|1|a|G|2625
8VL1|1|a|C|2626
8VL1|1|a|G|2627
8VL1|1|a|C|2628
8VL1|1|a|U|2629
8VL1|1|a|G|2630
*
8VL1|1|a|C|2788
8VL1|1|a|C|2789
*
8VL1|1|a|G|2894
8VL1|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20