J7_8VOQ_001

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8VOQ|1|a|C|2021

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOQ|1|a|C|8
8VOQ|1|a|G|9
8VOQ|1|a|A|10
8VOQ|1|a|C|11
8VOQ|1|a|U|12
8VOQ|1|a|A|13
8VOQ|1|a|A|14
8VOQ|1|a|G|15
*
8VOQ|1|a|U|525
8VOQ|1|a|A|526
8VOQ|1|a|C|527
8VOQ|1|a|A|528
8VOQ|1|a|A|529
8VOQ|1|a|G|530
8VOQ|1|a|C|531
*
8VOQ|1|a|G|2018
8VOQ|1|a|A|2019
8VOQ|1|a|A|2020
8VOQ|1|a|C|2021
8VOQ|1|a|U|2022
8VOQ|1|a|C|2023
*
8VOQ|1|a|G|2040
8VOQ|1|a|U|2041
8VOQ|1|a|A|2042
8VOQ|1|a|C|2043
*
8VOQ|1|a|G|2625
8VOQ|1|a|C|2626
8VOQ|1|a|G|2627
8VOQ|1|a|C|2628
8VOQ|1|a|U|2629
8VOQ|1|a|G|2630
*
8VOQ|1|a|C|2788
8VOQ|1|a|C|2789
*
8VOQ|1|a|G|2894
8VOQ|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13

Chain z

50S ribosomal protein L20