J7_8VPK_001
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGAG*CAGAU*GC*GGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8VPK|1|A|A|1062
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VPK|1|A|C|932
8VPK|1|A|G|933
8VPK|1|A|A|934
8VPK|1|A|A|935
8VPK|1|A|A|936
8VPK|1|A|U|937
*
8VPK|1|A|A|950
8VPK|1|A|G|951
*
8VPK|1|A|U|1060
8VPK|1|A|G|1061
8VPK|1|A|A|1062
8VPK|1|A|G|1063
*
8VPK|1|A|C|1089
8VPK|1|A|G|1090
8VPK|1|A|A|1091
8VPK|1|A|G|1092
8VPK|1|A|A|1093
8VPK|1|A|G|1094
*
8VPK|1|A|C|1105
8VPK|1|A|A|1106
8VPK|1|A|G|1107
8VPK|1|A|A|1108
8VPK|1|A|U|1109
*
8VPK|1|A|G|1282
8VPK|1|A|C|1283
*
8VPK|1|A|G|1300
8VPK|1|A|G|1301
8VPK|1|A|G|1302
8VPK|1|A|U|1303
8VPK|1|A|A|1304
8VPK|1|A|G|1305
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 3
- 50S Ribosomal Protein L37
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S Ribosomal Protein L20
- Chain S
- 50S Ribosomal Protein L21
- Chain e
- 50S ribosomal protein L35
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