J7_8VSA_002
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 8VSA|1|23S|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VSA|1|23S|C|817
8VSA|1|23S|G|818
8VSA|1|23S|A|819
8VSA|1|23S|A|820
8VSA|1|23S|A|821
8VSA|1|23S|G|822
*
8VSA|1|23S|C|835
8VSA|1|23S|G|836
8VSA|1|23S|C|837
*
8VSA|1|23S|G|942
8VSA|1|23S|A|943
8VSA|1|23S|C|944
8VSA|1|23S|A|945
8VSA|1|23S|C|946
*
8VSA|1|23S|G|971
8VSA|1|23S|A|972
8VSA|1|23S|A|973
8VSA|1|23S|G|974
8VSA|1|23S|A|975
8VSA|1|23S|G|976
*
8VSA|1|23S|C|987
8VSA|1|23S|A|988
8VSA|1|23S|G|989
8VSA|1|23S|A|990
8VSA|1|23S|C|991
*
8VSA|1|23S|G|1163
8VSA|1|23S|C|1164
*
8VSA|1|23S|G|1185
8VSA|1|23S|G|1186
8VSA|1|23S|G|1187
8VSA|1|23S|U|1188
8VSA|1|23S|A|1189
8VSA|1|23S|G|1190
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain 5S
- 5S ribosomal RNA; 5S rRNA
- Chain L15
- 50S ribosomal protein L15
- Chain L20
- 50S ribosomal protein L20
- Chain L21
- Ribosomal protein L21
- Chain L30
- Large ribosomal subunit protein uL30
- Chain L35
- 50S ribosomal protein L35
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