J7_8VTW_002

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

8VTW|1|1A|A|945, 8VTW|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J7_21233.4

Basepair signature

cWW-tSH-tHW-cSH-tHH-tHS-F-cWW-cWW-cWW-cWW-F-tSH-cWW-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

8VTW|1|1A|C|817
8VTW|1|1A|G|818
8VTW|1|1A|A|819
8VTW|1|1A|A|820
8VTW|1|1A|A|821
8VTW|1|1A|U|822
*
8VTW|1|1A|A|835
8VTW|1|1A|G|836
*
8VTW|1|1A|U|943
8VTW|1|1A|G|944
8VTW|1|1A|A|945
8VTW|1|1A|G|946
*
8VTW|1|1A|C|971
8VTW|1|1A|G|972
8VTW|1|1A|A|973
8VTW|1|1A|G|974
8VTW|1|1A|C|975
8VTW|1|1A|G|975|||A
8VTW|1|1A|C|976
*
8VTW|1|1A|G|987
8VTW|1|1A|A|988
8VTW|1|1A|G|989
8VTW|1|1A|A|990
8VTW|1|1A|C|991
*
8VTW|1|1A|G|1163
8VTW|1|1A|G|1164
*
8VTW|1|1A|C|1185
8VTW|1|1A|G|1186
8VTW|1|1A|G|1187
8VTW|1|1A|U|1188
8VTW|1|1A|A|1189
8VTW|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21