J7_8VTW_003

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

8VTW|1|2A|G|530, 8VTW|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTW|1|2A|A|8
8VTW|1|2A|U|9
8VTW|1|2A|G|10
8VTW|1|2A|G|11
8VTW|1|2A|U|12
8VTW|1|2A|A|13
8VTW|1|2A|A|14
8VTW|1|2A|G|15
*
8VTW|1|2A|U|525
8VTW|1|2A|A|526
8VTW|1|2A|C|527
8VTW|1|2A|A|528
8VTW|1|2A|A|529
8VTW|1|2A|G|530
8VTW|1|2A|C|531
*
8VTW|1|2A|G|2018
8VTW|1|2A|A|2019
8VTW|1|2A|A|2020
8VTW|1|2A|C|2021
8VTW|1|2A|U|2022
8VTW|1|2A|G|2023
*
8VTW|1|2A|C|2040
8VTW|1|2A|U|2041
8VTW|1|2A|A|2042
8VTW|1|2A|C|2043
*
8VTW|1|2A|G|2625
8VTW|1|2A|C|2626
8VTW|1|2A|G|2627
8VTW|1|2A|C|2628
8VTW|1|2A|A|2629
8VTW|1|2A|G|2630
*
8VTW|1|2A|C|2788
8VTW|1|2A|C|2789
*
8VTW|1|2A|G|2894
8VTW|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22