Loop J7_8VTX

3D structure

PDB id: 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Loop

Sequence: AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length: 35 nucleotides
Bulged bases: 8VTX|1|1A|G|530, 8VTX|1|1A|C|2021
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8VTX|1|1A|A|8
8VTX|1|1A|U|9
8VTX|1|1A|G|10
8VTX|1|1A|G|11
8VTX|1|1A|U|12
8VTX|1|1A|A|13
8VTX|1|1A|A|14
8VTX|1|1A|G|15
*
8VTX|1|1A|U|525
8VTX|1|1A|A|526
8VTX|1|1A|C|527
8VTX|1|1A|A|528
8VTX|1|1A|A|529
8VTX|1|1A|G|530
8VTX|1|1A|C|531
*
8VTX|1|1A|G|2018
8VTX|1|1A|A|2019
8VTX|1|1A|A|2020
8VTX|1|1A|C|2021
8VTX|1|1A|U|2022
8VTX|1|1A|G|2023
*
8VTX|1|1A|C|2040
8VTX|1|1A|U|2041
8VTX|1|1A|A|2042
8VTX|1|1A|C|2043
*
8VTX|1|1A|G|2625
8VTX|1|1A|C|2626
8VTX|1|1A|G|2627
8VTX|1|1A|C|2628
8VTX|1|1A|A|2629
8VTX|1|1A|G|2630
*
8VTX|1|1A|C|2788
8VTX|1|1A|C|2789
*
8VTX|1|1A|G|2894
8VTX|1|1A|U|2895

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 15: 50S ribosomal protein L32
Chain 1E: 50S ribosomal protein L3
Chain 1N: 50S ribosomal protein L13
Chain 1U: 50S ribosomal protein L20
Chain 1W: 50S ribosomal protein L22

J7_8VTX_001