J7_8VVP_001
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 8VVP|1|WA|G|1856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVP|1|WA|C|1668
8VVP|1|WA|A|1669
8VVP|1|WA|A|1670
8VVP|1|WA|A|1671
8VVP|1|WA|G|1672
8VVP|1|WA|U|1673
*
8VVP|1|WA|A|1686
8VVP|1|WA|G|1687
*
8VVP|1|WA|U|1854
8VVP|1|WA|G|1855
8VVP|1|WA|G|1856
8VVP|1|WA|G|1857
*
8VVP|1|WA|C|1881
8VVP|1|WA|G|1882
8VVP|1|WA|C|1883
8VVP|1|WA|U|1884
8VVP|1|WA|G|1885
8VVP|1|WA|C|1886
*
8VVP|1|WA|G|1897
8VVP|1|WA|A|1898
8VVP|1|WA|A|1899
8VVP|1|WA|C|1900
8VVP|1|WA|G|1901
*
8VVP|1|WA|C|2079
8VVP|1|WA|C|2080
*
8VVP|1|WA|G|2280
8VVP|1|WA|A|2281
8VVP|1|WA|G|2282
8VVP|1|WA|U|2283
8VVP|1|WA|A|2284
8VVP|1|WA|G|2285
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain AA
- L29
- Chain C
- uL4
- Chain DA
- L32
- Chain EA
- eL33
- Chain F
- uL30
- Chain K
- L13
- Chain P
- eL18
- Chain S
- eL21
- Chain XA
- 5S ribosomal RNA; 5S rRNA
- Chain Z
- L27a
Coloring options: