J7_8Y38_001
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GAU*AUGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 8Y38|1|A|C|988, 8Y38|1|A|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|A|C|862
8Y38|1|A|G|863
8Y38|1|A|A|864
8Y38|1|A|A|865
8Y38|1|A|A|866
8Y38|1|A|U|867
*
8Y38|1|A|A|880
8Y38|1|A|G|881
*
8Y38|1|A|U|987
8Y38|1|A|C|988
8Y38|1|A|A|989
8Y38|1|A|G|990
*
8Y38|1|A|C|1015
8Y38|1|A|G|1016
8Y38|1|A|A|1017
8Y38|1|A|A|1018
8Y38|1|A|A|1019
8Y38|1|A|G|1020
*
8Y38|1|A|C|1031
8Y38|1|A|A|1032
8Y38|1|A|G|1033
8Y38|1|A|A|1034
8Y38|1|A|C|1035
*
8Y38|1|A|G|1207
8Y38|1|A|A|1208
8Y38|1|A|U|1209
*
8Y38|1|A|A|1223
8Y38|1|A|U|1224
8Y38|1|A|G|1225
8Y38|1|A|G|1226
8Y38|1|A|U|1227
8Y38|1|A|A|1228
8Y38|1|A|G|1229
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain J
- Large ribosomal subunit protein uL15
- Chain O
- Large ribosomal subunit protein bL20
- Chain P
- Large ribosomal subunit protein bL21
- Chain X
- Large ribosomal subunit protein uL30
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