J7_8YDF_002
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 8YDF|1|1|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|817
8YDF|1|1|G|818
8YDF|1|1|A|819
8YDF|1|1|A|820
8YDF|1|1|A|821
8YDF|1|1|G|822
*
8YDF|1|1|C|835
8YDF|1|1|G|836
8YDF|1|1|C|837
8YDF|1|1|C|838
*
8YDF|1|1|G|940
8YDF|1|1|A|941
8YDF|1|1|G|942
8YDF|1|1|A|943
8YDF|1|1|C|944
8YDF|1|1|A|945
8YDF|1|1|C|946
*
8YDF|1|1|G|971
8YDF|1|1|A|972
8YDF|1|1|A|973
8YDF|1|1|G|974
8YDF|1|1|A|975
8YDF|1|1|G|976
*
8YDF|1|1|C|987
8YDF|1|1|A|988
8YDF|1|1|G|989
8YDF|1|1|A|990
8YDF|1|1|C|991
*
8YDF|1|1|G|1163
8YDF|1|1|C|1164
*
8YDF|1|1|G|1185
8YDF|1|1|G|1186
8YDF|1|1|G|1187
8YDF|1|1|U|1188
8YDF|1|1|A|1189
8YDF|1|1|G|1190
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L30
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