J7_8YLD_001
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 8YLD|1|A|G|1115, 8YLD|1|A|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLD|1|A|C|949
8YLD|1|A|G|950
8YLD|1|A|A|951
8YLD|1|A|A|952
8YLD|1|A|G|953
8YLD|1|A|U|954
8YLD|1|A|U|955
8YLD|1|A|U|956
*
8YLD|1|A|A|965
8YLD|1|A|U|966
8YLD|1|A|A|967
8YLD|1|A|G|968
*
8YLD|1|A|U|1114
8YLD|1|A|G|1115
8YLD|1|A|G|1116
8YLD|1|A|G|1117
*
8YLD|1|A|C|1141
8YLD|1|A|G|1142
8YLD|1|A|A|1143
8YLD|1|A|U|1144
8YLD|1|A|G|1145
8YLD|1|A|C|1146
*
8YLD|1|A|G|1157
8YLD|1|A|A|1158
8YLD|1|A|A|1159
8YLD|1|A|C|1160
8YLD|1|A|G|1161
*
8YLD|1|A|C|1338
8YLD|1|A|C|1339
*
8YLD|1|A|G|1365
8YLD|1|A|A|1366
8YLD|1|A|G|1367
8YLD|1|A|U|1368
8YLD|1|A|A|1369
8YLD|1|A|G|1370
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain I
- Large ribosomal subunit protein uL30A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain d
- Large ribosomal subunit protein eL29
- Chain g
- Large ribosomal subunit protein eL32
- Chain h
- Large ribosomal subunit protein eL33A
Coloring options: