3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
9AX7|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9AX7|1|a|C|817
9AX7|1|a|G|818
9AX7|1|a|A|819
9AX7|1|a|A|820
9AX7|1|a|A|821
9AX7|1|a|G|822
*
9AX7|1|a|C|835
9AX7|1|a|G|836
9AX7|1|a|C|837
9AX7|1|a|C|838
*
9AX7|1|a|G|940
9AX7|1|a|A|941
9AX7|1|a|G|942
9AX7|1|a|A|943
9AX7|1|a|C|944
9AX7|1|a|A|945
9AX7|1|a|C|946
*
9AX7|1|a|G|971
9AX7|1|a|A|972
9AX7|1|a|A|973
9AX7|1|a|G|974
9AX7|1|a|A|975
9AX7|1|a|G|976
*
9AX7|1|a|C|987
9AX7|1|a|A|988
9AX7|1|a|G|989
9AX7|1|a|A|990
9AX7|1|a|C|991
*
9AX7|1|a|G|1163
9AX7|1|a|C|1164
*
9AX7|1|a|G|1185
9AX7|1|a|G|1186
9AX7|1|a|G|1187
9AX7|1|a|U|1188
9AX7|1|a|A|1189
9AX7|1|a|G|1190

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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