J7_9B00_001

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

9B00|1|1A|A|945, 9B00|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|1A|C|817
9B00|1|1A|G|818
9B00|1|1A|A|819
9B00|1|1A|A|820
9B00|1|1A|A|821
9B00|1|1A|U|822
*
9B00|1|1A|A|835
9B00|1|1A|G|836
*
9B00|1|1A|U|943
9B00|1|1A|G|944
9B00|1|1A|A|945
9B00|1|1A|G|946
*
9B00|1|1A|C|971
9B00|1|1A|G|972
9B00|1|1A|A|973
9B00|1|1A|G|974
9B00|1|1A|C|975
9B00|1|1A|G|975|||A
9B00|1|1A|C|976
*
9B00|1|1A|G|987
9B00|1|1A|A|988
9B00|1|1A|G|989
9B00|1|1A|A|990
9B00|1|1A|C|991
*
9B00|1|1A|G|1163
9B00|1|1A|G|1164
*
9B00|1|1A|C|1185
9B00|1|1A|G|1186
9B00|1|1A|G|1187
9B00|1|1A|U|1188
9B00|1|1A|A|1189
9B00|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21