J7_9B4Z_001

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

9B4Z|1|BA|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BA|C|8
9B4Z|1|BA|G|9
9B4Z|1|BA|A|10
9B4Z|1|BA|C|11
9B4Z|1|BA|U|12
9B4Z|1|BA|A|13
9B4Z|1|BA|A|14
9B4Z|1|BA|G|15
*
9B4Z|1|BA|U|525
9B4Z|1|BA|A|526
9B4Z|1|BA|C|527
9B4Z|1|BA|A|528
9B4Z|1|BA|A|529
9B4Z|1|BA|G|530
9B4Z|1|BA|C|531
*
9B4Z|1|BA|G|2018
9B4Z|1|BA|A|2019
9B4Z|1|BA|A|2020
9B4Z|1|BA|C|2021
9B4Z|1|BA|U|2022
9B4Z|1|BA|C|2023
*
9B4Z|1|BA|G|2040
9B4Z|1|BA|U|2041
9B4Z|1|BA|A|2042
9B4Z|1|BA|C|2043
*
9B4Z|1|BA|G|2625
9B4Z|1|BA|C|2626
9B4Z|1|BA|G|2627
9B4Z|1|BA|C|2628
9B4Z|1|BA|U|2629
9B4Z|1|BA|G|2630
*
9B4Z|1|BA|C|2788
9B4Z|1|BA|C|2789
*
9B4Z|1|BA|G|2894
9B4Z|1|BA|G|2895

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22