J7_9BDN_001
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 9BDN|1|A28S|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDN|1|A28S|C|1666
9BDN|1|A28S|A|1667
9BDN|1|A28S|A|1668
9BDN|1|A28S|A|1669
9BDN|1|A28S|G|1670
9BDN|1|A28S|U|1671
*
9BDN|1|A28S|A|1684
9BDN|1|A28S|G|1685
*
9BDN|1|A28S|U|1852
9BDN|1|A28S|G|1853
9BDN|1|A28S|G|1854
9BDN|1|A28S|G|1855
*
9BDN|1|A28S|C|1879
9BDN|1|A28S|G|1880
9BDN|1|A28S|C|1881
9BDN|1|A28S|U|1882
9BDN|1|A28S|G|1883
9BDN|1|A28S|C|1884
*
9BDN|1|A28S|G|1895
9BDN|1|A28S|A|1896
9BDN|1|A28S|A|1897
9BDN|1|A28S|C|1898
9BDN|1|A28S|G|1899
*
9BDN|1|A28S|C|2077
9BDN|1|A28S|C|2078
*
9BDN|1|A28S|G|2278
9BDN|1|A28S|A|2279
9BDN|1|A28S|G|2280
9BDN|1|A28S|U|2281
9BDN|1|A28S|A|2282
9BDN|1|A28S|G|2283
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL04
- 60S ribosomal protein L4
- Chain AL07
- 60S ribosomal protein L7
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- Large ribosomal subunit protein eL29
- Chain AL32
- Large ribosomal subunit protein eL32
- Chain AL33
- 60S ribosomal protein L35a
Coloring options: